As I sit here watching the ice come down, I will post my two cents worth.
The method Curt, and Gene (through Randy) put up is certainly the way to apply the inklines themselves. I would just add one more thing. If a line skips in a section, let it dry. Shoot a light coat of clear over it and then come back with a smaller tipped pen and fill in the dots. You can move the staight edge just slightly to get the width needed. This is sometimes a little easier than trying to reposition the straight edge perfectly to get the line without a major stop and start bulge because you missed the alignment slightly.
I would also like to add on placement and thicknesses. Placement is best found by looking at real planes. What better way to find out where to put lines than just to look at a real plane. Even if your plane is not modeled after a real plane, the placement of the lines can be similar.
As to thickeness, here is my thoughts. Most certainly use several thickeness throughout the plane. I am not partial to a one thickness inklined plane. It really needs variety to look right. I like it when you seem to be drawn into the plane. Example, at 20 feet, you see a couple major lines that is all. At 10 feet you see a few more. 5 feet you really start seeing all but the screw heads. When you are right on top of it, you can everything.
I will use my Stuka's as an example. The heaviest lines are the major break lines on the real plane. The real Stuka had those goofy multiflap/divebrakes on the TE of the wing. These things had big gaps. I used the largest pen I have (number 4) and actually double or tripple up the line at that spot. Another heavy line is where the cowl meets the main fuselage. I have a heavy line there again because of the big gap of the real plane. Next thinnest is the trim tabs since there is always a gap on real planes at the movable surfaces. I will then use just a single line of the thickest pen. Next comes the panel lines themselves. I like to use a number 0 pen for those. Again the trick is to be subtle. You do not want to overpower the paintscheme. Access panels I will use a 00 pen for those. The screw heads I use the smallest pen, 000. If you have major panels that get removed, say the gun access panels on a Mustang, I would most likely use a number 1 pen. These are prominent but you do not want them to just scream out at you either.
Again, I cannot over emphasize the need for being suble in my opinion. I once read where someone thought it was necessary to put the lines on the plane so the judges can see them in the air. Unfortunately, IMO it would ruin the looks on the ground. Besides, the judges are supposed to look at the shapes the plane makes while flying, not how pretty it looks. The pretty points where already awarded before the flight. Who cares what the inklines look like in the air! You want the lines to look good on the ground.
Hope this helps. Again do not be afraid of trying the ink lines. Just do a few. Say trim tabs and a few access panels and quit. The next time try a few more and the next time a few more after that. My panel lines evolved that way. I am now to the point where I figure I have it "just right" and can copy the lines from one plane to the next. A big time saver because I am not scratching my head trying to figure out what looks right and should I add a little something over there.
Time to get some more ice off the car. I wish I had a garage!