Ron,
I also built a MARS a while back. Beautiful flier! Mine weighed about 30 oz with a baffle piston Fox.25. I did the backplate-bolts through the firewall thing, and found problems similar to those you mentioned.
I would still do it that way... On US engines, backplate bolts are either 3-48 (older, smaller Fox, possibly others) or 4-40. For non-US engines, I hope you have a good contact with a fasteners supplier...
It is possible, and only a few-cuss-words-awkward to get the engine in and secured using Allen head bolts/small L-shaped key.
Mine loosened up the firewall after a dozen or so flights. I may rebuild it someday... recommended: a realy solid tie-in of firewall to doublers and sides. An idea for how to do this in a pretty cramped engine bay -- pad the firewall back a bit, say 1/8 to 1/4", with a 5-ply spacer or two behind the engine's backplate. ...just enough larger than that so the bolts won't split out the plywood piece(s).
That leaves room to work around the head and exhaust stack, and not compromise the actual firewall structure. . On mine, I had to carve away some of the structural firewall to get a fit. Not a good thing, that. The removable hatch only covered the center fuselage area, and the engine slipped in a la model without removable cowl... like foot into slipper?
Hatch ran full length of the tank bay. Occasionally the tank had to come out to allow keying the Allen bolts in solidly. Nose gear separately mounted to firewall, NOT held on by clips under the backplate bolts.
The baffle .25 was plenty adequate, and (with a few of my touches) did not shake much. MARS was smaller than the Chief and T-Bird, with a thinner airfoil, meant -- like the SMOOTHIE -- for windier days. Doesn't need tons of power...